PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0311000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 440aa    MW: 44442.3 Da    PI: 6.1835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0311000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12222267555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  ORGLA02G0311000.1 222 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 267
                        99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17215277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16219276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-13221271No hitNo description
PfamPF000102.9E-9222267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MQPNARQMHG GGGGGGGQDD FFDQMLSTLP AVWSELGSGK PAWDLTAGAV GGGGGASDDH  60
SAAAFDDSAL LASRLRQHQI DGGGDKPIML QLSDLHRHHG LAAGDDSGGA AGFLPLSLFA  120
DRSQDDIDAA FKSPNGARGD HALYNGFGAA GMHGAAAMQP PPFGQVRSMP AQSFGGGAAA  180
SGGGGGGSAS AAAAAGASSG GGAAAPPRQR QRARRGQATD PHSIAERLRR ERIAERMKAL  240
QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG ASAVAPLVAN MSSESNGNGN  300
ATSSSGNGEA ANGSSNGDNN RGGTLRVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA  360
TAISSATSSS LLPRTGGGAG GSLHEGGNGT SPPLVNGAAT GCDDSGVFFS VKFVVELSFL  420
LLNEDCRGKE ESKLLVQKGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039750.0AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0040940.0AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627343.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG98e-79BH066_ARATH; Transcription factor bHLH66
TrEMBLI1P5540.0I1P554_ORYGL; Uncharacterized protein
STRINGORGLA02G0311000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-41LJRHL1-like 3